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Examples
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The viruses in these major examples of putative codivergence of viruses and hosts have RNA genomes that replicate using error prone RNA-dependent RNA polymerases encoded by the viral genomes.
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To explore further the possibility of the codivergence of virus and host, we included additional members of the
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Viruses that have spent most of their evolutionary time associated with a single host lineage should have sequences that reflect codivergence of virus and host.
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Assuming codivergence, an evolutionary rate of 10 -8 substitutions per site per year was calculated.
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That the molecular clock has not been ticking uniformly in all lineages and in both halves of the viral genome removes the molecular clock as a tool for testing the codivergence hypothesis.
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Non-congruence of PACCAD clade host branching patterns with branching patterns of viruses named for those hosts seems to argue against the codivergence hypothesis.
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The sequences obtained from the NCBI database used in phylogenetic comparison and codivergence analysis.
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